Troubleshooting Suboptimal ClickHouse Queries

To troubleshoot and optimize slow ClickHouse queries, follow these steps:

1. Use EXPLAIN to Analyze Query Plans

EXPLAIN syntax SELECT * FROM table WHERE condition

Available syntax options:

  • EXPLAIN PLAN – shows execution plan
  • EXPLAIN PIPELINE – shows detailed processing pipeline
  • EXPLAIN ESTIMATE – provides execution cost estimates

2. Profile Queries with EXPLAIN ANALYZE

EXPLAIN ANALYZE SELECT * FROM table WHERE condition

This provides actual execution metrics including time spent in each processing step.

3. Check System Tables

Examine query performance data:

SELECT 
    query_id,
    query,
    read_rows,
    read_bytes,
    memory_usage,
    query_duration_ms
FROM system.query_log
WHERE type = 'QueryFinish'
ORDER BY query_duration_ms DESC
LIMIT 10

4. Common Optimization Techniques

  1. Proper Schema Design
    • Use appropriate data types (smaller is better)
    • Order columns by frequency of use in WHERE clauses
    • Choose optimal table engines (MergeTree family for analytics)
  2. Optimize JOINs
    • Use the join_algorithm setting to control join methods
    • Consider denormalizing data when possible
  3. Improve WHERE Clauses
    • Place high-cardinality columns first
    • Avoid functions on indexed columns
    • Use PREWHERE for filtering before reading full rows
  4. Partitioning and Sorting
    • Partition by coarse filters (date, category)
    • Sort by frequently filtered columns
  5. Materialized Views
    • Pre-aggregate commonly used queries

5. Adjust Server Settings

SET max_threads = 8;
SET max_memory_usage = 20000000000;

Key settings to consider:

  • max_threads
  • max_memory_usage
  • max_bytes_before_external_sort
  • max_bytes_before_external_group_by

6. Use Sampling for Large Datasets

SELECT * FROM table SAMPLE 0.1

This helps test query patterns on a fraction of data.

7. Monitor and Adjust

Continuously monitor query performance and adjust your optimization strategy based on changing workloads and data volumes.



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About Shiv Iyer 253 Articles
Open Source Database Systems Engineer with a deep understanding of Optimizer Internals, Performance Engineering, Scalability and Data SRE. Shiv currently is the Founder, Investor, Board Member and CEO of multiple Database Systems Infrastructure Operations companies in the Transaction Processing Computing and ColumnStores ecosystem. He is also a frequent speaker in open source software conferences globally.